Technical Note: DEIMOS CCD Bias Variations

v0.1 (preliminary) 2009-Mar-01

Summary

This document describes problems with CCD readouts on DEIMOS.

Background

The DEIMOS CCD readout electronics were very reliable and stable from its mid-2002 inception until the earthquake of October 2006. Since that time, the DEIMOS CCD electronics have periodically shown two sorts of problems:

Intermittent, low-amplitude (~10 DN), short-timescale fluctuations in the CCD bias level, appearing as stripes in the readout of certain CCD amplifiers. This problem has impacted several of the amplifiers. This is a relatively benign problem which can generally be corrected by appropriate overscan subtraction methods.
Intermittent severe bias drops (>1000 DN) which result in partial or total loss of data from one or more amplifiers on the science mosaic, largely affecting the CCD1B amplifier. This problem renders the data in the affected region unrecoverable.

From late 2006 through late 2008, failures leading to loss of data were few and far between; in a typicaly oberving run, no data would be lost to the problem. Troubleshooting in 2007 conducted by Keck and Lick personnel concluded that the source of the problems was either within the dewar electronics wiring or possibly within the dewar itself. Since these are among the most sensitive areas of the instrument, we decided against taking any action to address the problem due to the possibility that we could just as easily make things worse as to fix the existing minor problems. During the January 2009 DEIMOS run some data were lost and the February 2009 run saw numerous bad images leading to nigttime loss of data. Thus, we decided to gather information on the rate and severity of bias fluctuations in CCD readouts.

Methodology

We have written custom IDL software to determine the variation in bias level in each amplifier of a DEIMOS science image. For a given amplifier, the routine deimos_bad_amp_problem.pro does the following:

Extracts the overscan pixels from the readout.
Determines whether any zero-valued pixels occur within the overscan region. If so, the amp is flagged as having a "major" problem.
Otherwise, a median overscan column is computed from the available overscan region.
The peak-to-peak variation in the median overscan column is measured. Typically the peak-to-peak variation is less than 5 DN in a "good" DEIMOS image. If the peak-to-peak variation exceeds a threshold of 10 DN, the amp is flagged as having a "minor" problem.
The resulting image name, amplifier name, DEIMOS rotator position, peak-to-peak overscan variation, and status (good/minor/major) are written to a logfile for further analysis.

Analysis

Problems as a function of amplifier

The table and figure below present the resulting counts and frequency of problem readouts as a function of the amplifier on the DEIMOS CCD mosaic. Among the DEIMOS images available on disk as of 2009 February, the key findings are:

Major overscan problems are most prevalent on CCD amplifier 1B, which had failures on 3.4% of readouts.
Minor problems occurred most often on amplifier 5B, with a 27.1% problem rate. Inspection of these images shows that the failures on this amplifier are generally similar and appear as an increase of several hundred DN in the bias level on the first first rows of the readout.

**Table 1: Overscan problems vs. Amplifier**
Amp	Count				Rate
Amp	Total	Good	Minor	Major	Minor	Major	Bad (Minor+Major)
1A	1343	1341	1	1	0.1%	0.1%	0.1%
1B	3724	3559	125	40	3.4%	1.1%	4.4%
2A	1343	1337	3	3	0.2%	0.2%	0.4%
2B	3724	3709	1	14	0.0%	0.4%	0.4%
3A	1343	1334	4	5	0.3%	0.4%	0.7%
3B	3724	3704	3	17	0.1%	0.5%	0.5%
4A	1343	1337	1	5	0.1%	0.4%	0.4%
4B	3724	3716	3	5	0.1%	0.1%	0.2%
5B	2388	1741	0	647	0.0%	27.1%	27.1%
6B	2388	2332	0	56	0.0%	2.3%	2.3%
7B	2388	2353	0	35	0.0%	1.5%	1.5%
8B	2388	2314	0	74	0.0%	3.1%	3.1%

Figure 1: Frequency of minor (thin line) and major (heavy line) CCD overscan problems as a function of DEIMOS CCD mosaic amplifier number.

Problems as a function of rotator position

The table and figure below present the resulting counts and frequency of problem readouts as a function of the DEIMOS rotator position as encoded in the ROTATVAL header keyword. Although major failures can occur at a wide range of rotator positions, it appears that they are somewhat more likely to happen near ROTATVAL=320°.

Figure 2: Frequency of minor (thin line) and major (heavy line) CCD overscan problems as a function of DEIMOS rotator angle.

Problems as a function of date

The table and figure below present the resulting counts and frequency of problem readouts as a function date for DEIMOS images acquired since late 2008. The x-axis in the plot is the date converted into a fractional year (e.g., 2009-Jan-01 = 2009.000). Note the significant increase in the frequency of major failures in early 2009 compared with data from 2008.

Figure 3: Frequency of minor (thin line) and major (heavy line) CCD overscan problems as a function of time.

Conclusions and Recommendations

Major readout failures (leading to data loss) on the DEIMOS science CCD mosaic are occuring with greater frequency during early 2009.
The current rate of loss of several percent of DEIMOS data per night is unacceptable.

Other recommendations TBD.

Appendix A: Images with major failures since 2009-Jan-01

Major failures are defined as those which lead to data loss. The last column gives the peak-to-peak variation in the median overscan. When its value is zero, that indidates that the entire amp read out as zero.

Date       Image                                             Amp Rotat  Diff
------------------------------------------------------------ --- -----  ----
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     3A  -30   1392
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     2A  -30   1459
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     3A  -30   1353
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     3B  -30   1424
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     4B  -30   1495
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     2A  -30   1462
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     3A  -30   1349
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     3B  -30   1423
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     4B  -30   1499
2009-01-24 /s/sdata1002/deimos18/2009jan24/d0124_0001.fits    1B  -25      0
2009-01-24 /s/sdata1002/deimos18/2009jan24/d0124_0002.fits    1B  -25    992
2009-01-24 /s/sdata1002/deimos18/2009jan24/d0124_0003.fits    1B  -25   1003
2009-01-24 /s/sdata1002/deimos18/2009jan24/d0124_0004.fits    1B  -25    993
2009-01-25 /s/sdata1003/deimos18/2009jan25/d0125_0087.fits    1B -383   1015
2009-01-26 /s/sdata1002/deimos19/2009jan26/d0126_0025.fits    1B -190   1014
2009-01-26 /s/sdata1002/deimos19/2009jan26/d0126_0026.fits    1B -198   1014
2009-01-26 /s/sdata1002/deimos19/2009jan26/d0126_0027.fits    1B -204   1011
2009-01-26 /s/sdata1002/deimos19/2009jan26/d0126_0041.fits    1B -352   1013
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0056.fits    1B -233   1013
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0069.fits    1B -294      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0071.fits    1B -296      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0072.fits    1B -298      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0073.fits    1B -322   1018
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0074.fits    1B -342   1017
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0075.fits    1B -353      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    1A -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    1B -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    2A -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    2B -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    3A -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    3B -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    4A -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0076.fits    4B -357  65535
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0079.fits    1B -357   1016
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0080.fits    1B -356   1003
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0082.fits    1B -243      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0083.fits    1B -239      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0084.fits    1B -236      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0085.fits    1B -232      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0086.fits    1B -230      0
2009-01-27 /s/sdata1003/deimos20/2009jan27/d0127_0087.fits    1B -228      0
2009-01-28 /s/sdata1003/deimos20/2009jan28/d0128_0161.fits    1B    7   1016
2009-01-28 /s/sdata1003/deimos20/2009jan28/d0128_0163.fits    1B -121   1009
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0049.fits.gz  1B  -30   1185
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0050.fits.gz  1B  -30   1170
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0081.fits.gz  1B -396      0
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0083.fits.gz  1B -396      0
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0094.fits.gz  1B  -48    984
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0095.fits.gz  1B  -48      0
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0101.fits.gz  1B -103   1010
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0102.fits.gz  1B -121   1010
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0105.fits.gz  1B -152      0
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0106.fits.gz  1B -153      0
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0107.fits.gz  1B -160   1012
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0110.fits.gz  1B -202    999
2009-02-15 /s/sdata1003/deimos1/2009feb15/d0215_0119.fits.gz  1B -307   1027
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0015.fits     1B  -30    996
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0016.fits     1B  -30    999
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0017.fits     1B  -30   1002
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0055.fits     1B  -30   1189
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0083.fits     1B  -30   1110
2009-02-16 /s/sdata1002/deimos1/2009feb16/d0216_0121.fits     1B -312   1012
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0113.fits     1B  -46      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0114.fits     1B  -46      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0115.fits     1B  -46      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0116.fits     1B  -46      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0117.fits     1B  -47      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0118.fits     1B  -47      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0119.fits     1B  -47      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0120.fits     1B  -48      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0121.fits     1B  -48      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0122.fits     1B  -48      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0123.fits     1B  -49      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0133.fits     1B -153      0
2009-02-17 /s/sdata1003/deimos1/2009feb17/d0217_0136.fits     1B -182   1004
2009-02-19 /s/sdata1003/deimos2/2009feb19/d0219_0065.fits     1B -251      0
2009-02-19 /s/sdata1003/deimos2/2009feb19/d0219_0066.fits     1B -252      0
2009-02-19 /s/sdata1003/deimos2/2009feb19/d0219_0068.fits     1B -319      0
2009-02-20 /s/sdata1003/deimos3/2009feb20/d0220_0082.fits     1B -317      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0106.fits     1B  -93    988
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0111.fits     1B -104   1000
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0113.fits     1B -103   1008
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0118.fits     1B  -91      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0119.fits     1B  -91      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0120.fits     1B  -91      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0121.fits     1B -275      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0122.fits     1B -275      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0123.fits     1B -277      0
2009-02-22 /s/sdata1002/deimos4/2009feb22/d0222_0125.fits     1B -300      0
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0097.fits     1B -259      0
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0098.fits     1B -259      0
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0099.fits     1B -260      0
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0119.fits     1B -124      0
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0120.fits     1B -119    984
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0121.fits     1B -114   1007
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0122.fits     1B  -48    715
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0125.fits     1B  -46    957
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0126.fits     1B  -40   1007
2009-02-23 /s/sdata1003/deimos4/2009feb23/d0223_0130.fits     1B  -52      0
2009-02-27 /s/sdata1003/deimos7/2009feb27/d0227_1060.fits     1B -170      0
2009-02-27 /s/sdata1003/deimos7/2009feb27/d0227_1062.fits     1B -165    984
2009-02-27 /s/sdata1003/deimos7/2009feb27/d0227_1065.fits     1B  181    999
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2095.fits     1B -167      0
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2099.fits     1B -237   1012
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2103.fits     1B  -45      0
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2105.fits     1B  -45    992
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2106.fits     1B  -40   1009
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2112.fits     1B -171      0
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2113.fits     1B -175      0
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2114.fits     1B -180   1011
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2116.fits     1B -239   1010
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2124.fits     1B -185    995
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2127.fits     1B -336   1176
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2137.fits     1B -336   1096
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2139.fits     1B -336   1005
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2143.fits     1B -336   1025
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2152.fits     1B -336    847
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2153.fits     1B -336    954
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2154.fits     1B -336   1030
2009-02-28 /s/sdata1002/deimos7/2009feb28/d0228_2156.fits     1B -336   1050
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0001.fits     1B  -25      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0050.fits     1B -132      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0051.fits     1B -132      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0052.fits     1B -132      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0053.fits     1B -131    984
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0055.fits     1B -131      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0057.fits     1B -131      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0058.fits     1B -130      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0059.fits     1B -129      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0060.fits     1B -126      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0065.fits     1B -112      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0066.fits     1B -112      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0068.fits     1B -121   1010
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0071.fits     1B -142      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0078.fits     1B -219      0
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0082.fits     1B -159    973
2009-03-01 /s/sdata1003/deimos8/2009mar01/d0301_0084.fits     1B -138      0
2009-03-02 /s/sdata1002/deimos8/2009mar02/d0302_0003.fits     1B  -24      0

Appendix B: Images with minor failures since 2009-Jan-01

Minor failures are those from which recovery of data values for all pixels is possible. The last column gives the peak-to-peak variation in the median overscan. When its value is zero, that indidates that the entire amp read out as zero.

Date       Image                                             Amp Rotat  Diff
------------------------------------------------------------ --- -----  ----
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     2A  -30    568
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     2B  -30     32
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     3A  -30     66
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     3B  -30    169
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     4A  -30     14
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0024.fits     4B  -30     33
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     2A  -30   1065
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     2B  -30     76
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     3B  -30    462
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     4A  -30     30
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0025.fits     4B  -30    479
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     2B  -30     73
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0026.fits     4A  -30     27
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     2B  -30     78
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0027.fits     4A  -30     29
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     2A  -30   1263
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     2B  -30     37
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     3A  -30     68
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     3B  -30    421
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     4A  -30     14
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0028.fits     4B  -30     34
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0030.fits     8B  -30     11
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0032.fits     2B  -30    284
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0032.fits     3B  -30     85
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0033.fits     2B  -30    288
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0033.fits     3B  -30    106
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0034.fits     2B  -30    292
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0034.fits     3B  -30     87
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0035.fits     2B  -30    299
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0035.fits     3B  -30    116
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0036.fits     2B  -30    225
2009-01-22 /s/sdata1003/dmoseng/2009jan22/d0122_0036.fits     3B  -30     33
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Last modified: Mon Mar 2 00:29:53 HST 2009